PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009540m
Common NameCICLE_v10009540mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 200aa    MW: 22012.4 Da    PI: 4.4774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009540mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2575e-181565155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+ykGVr +k +g++v+eIr p++   r+r++lg+++tae+Aa+a +aa  +l+g
  Ciclev10009540m 15 SRYKGVRKRK-WGKYVSEIRLPNS---RARIWLGSYDTAEKAARAFDAALFCLRG 65
                     79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-111565IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-201574IPR016177DNA-binding domain
CDDcd000189.36E-311575No hitNo description
SMARTSM003808.5E-331679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-291674IPR001471AP2/ERF domain
PROSITE profilePS5103221.7331673IPR001471AP2/ERF domain
PRINTSPR003671.3E-91728IPR001471AP2/ERF domain
PRINTSPR003671.3E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVKHAVEKPA EGSDSRYKGV RKRKWGKYVS EIRLPNSRAR IWLGSYDTAE KAARAFDAAL  60
FCLRGRSAKF NFPDNPPDIS GGRSLKPSEI QAVAAQFANS EPLRSQSPEQ SVSELQTEYL  120
SPSISEATVQ LDSDGVFDGS LLDLLTASSS NNYPSEYGIF PGFDDLSNDI FTPQLPAVDF  180
ADENFDGLLL NQDSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1615731372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.50180.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452855.11e-144ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-56ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLV4UP471e-143V4UP47_9ROSI; Uncharacterized protein
STRINGXP_006452855.11e-143(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]