PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009700m
Common NameCICLE_v10009700mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 173aa    MW: 19577.6 Da    PI: 4.6654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009700mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-141556548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++E++l+++  k+lG++ W++Ia +++ gRt++++k++w+++l
  Ciclev10009700m 15 SQQEEDLIIRMPKRLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 56
                     799***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.355660IPR017930Myb domain
SMARTSM007175.9E-111058IPR001005SANT/Myb domain
SuperFamilySSF466893.35E-121563IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-191557IPR009057Homeodomain-like
PfamPF002492.2E-121556IPR001005SANT/Myb domain
CDDcd001678.14E-111556No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEELPETKHQ ARCISQQEED LIIRMPKRLG NRWSLIAGRL PGRTDNEVKN YWNTHLNKKC  60
RFGKRKATAV DMGTHNINGG DCRENNDDGG SNSKLPAPPM CRNSLNASQG FEEERNDYDA  120
NTWTEGDCGG SFNNYLECAL IPPNNSTFVF DDEPFIAYLD SFLVFETFEC NQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475895.11e-114transcription factor MYB82
TrEMBLV4UNV41e-126V4UNV4_9ROSI; Uncharacterized protein
STRINGXP_006450871.11e-127(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-23myb domain protein 82