PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10009823m

Common Name

CICLE_v10009560mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

YABBY

Protein Properties

Length: 146aa MW: 16489.4 Da PI: 10.4093

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10009823m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	126.8	3.1e-39	43	118	94	170
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++k ++e+ r p PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Ciclev10009823m 43 MRTPTNK-ATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 118 2222222.33333334455668999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.2E-39	19	118	IPR006780	YABBY protein
SuperFamily	SSF47095	3.27E-8	58	111	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.2E-5	65	112	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MAAAFQSLSW QDVHHHQAPS YASPECRIDL GSSSKCNNKI SAMRTPTNKA TEERVVNRRE 60 SPHSTTPEKR QRVPSAYNQF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML 120 EANNQPKLDD ASGNRLMSRT ALRNK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.2367	0.0	flower\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	2e-54	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBank	KJ667746	2e-54	KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450895.1	1e-105	axial regulator YABBY 5 isoform X1
Refseq	XP_006475868.1	1e-105	axial regulator YABBY 5 isoform X1
Swissprot	Q8GW46	3e-47	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A067GNH4	1e-104	A0A067GNH4_CITSI; Uncharacterized protein
TrEMBL	A0A067GY42	1e-104	A0A067GY42_CITSI; Uncharacterized protein
TrEMBL	V4UDN9	1e-104	V4UDN9_9ROSI; Uncharacterized protein
TrEMBL	V4UIV5	1e-104	V4UIV5_9ROSI; Uncharacterized protein
STRING	XP_006475868.1	1e-104	(Citrus sinensis)
STRING	XP_006450895.1	1e-104	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-49	YABBY family protein

Link Out ? help Back to Top
Phytozome	Ciclev10009823m
Entrez Gene	18055400

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]