PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009937m
Common NameCICLE_v10009761mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 120aa    MW: 13543.8 Da    PI: 4.5568
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009937mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.95.6e-1098118121
                      ---SS-EEEEEEE--TT-SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                      ldDg++WrKYG+K+vk+s++p
  Ciclev10009937m  98 LDDGFKWRKYGKKMVKNSPNP 118
                      59*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-1184118IPR003657WRKY domain
SuperFamilySSF1182903.79E-891118IPR003657WRKY domain
PROSITE profilePS5081112.69193119IPR003657WRKY domain
PfamPF031061.3E-599118IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSNINLIPQD SPESDSAEKT NFELSEYLTF DEWFEDDQAS KLFGYVQNPV YRANEVVEPG  60
GTSTHFEGPS NSDNDSGREK KPVKERVAFK TKSDVEILDD GFKWRKYGKK MVKNSPNPS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5731491e-114AB573149.1 Citrus unshiu genomic DNA, polyembryony locus, cultivar: Miyagawa wase.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453039.13e-83probable WRKY transcription factor 50 isoform X2
SwissprotQ8VWQ52e-20WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLV4WHU67e-82V4WHU6_9ROSI; Uncharacterized protein
STRINGXP_006453040.11e-81(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.19e-23WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]