PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010326m
Common NameCICLE_v10010326mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 244aa    MW: 27061.4 Da    PI: 9.4346
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010326mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-1896150256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++t eq + Le+ F+ + +++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Ciclev10010326m  96 RKKLRLTIEQSRLLEDSFKLHATLNSSQKQALAEQLSLEPRQVEVWFQNRRARTK 150
                      6778899**********************************************98 PP
2HD-ZIP_I/II116.31.8e-3796184189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rl+ eq++lLE+sF+ + +L++++K++la++L l+prqv+vWFqnrRARtk+kq E+d+e+Lk+++++l++en+rL+ke +eL++
  Ciclev10010326m  96 RKKLRLTIEQSRLLEDSFKLHATLNSSQKQALAEQLSLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKELQELQS 184
                      69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-1792153IPR009057Homeodomain-like
PROSITE profilePS5007116.58492152IPR001356Homeobox domain
SMARTSM003896.3E-1694156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-1796150IPR009057Homeodomain-like
CDDcd000861.92E-1496153No hitNo description
PfamPF000461.5E-1596150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PfamPF021831.6E-7152184IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.4E-17152197IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAAEECNTG LCLGLGVGEH AAGRHERPKD NNNNNNNKRS AARAFLDLSF TLCPKDEDTG  60
RMDHNLSIGS GSKMSQDDGK AGVGNGNSKR INISGRKKLR LTIEQSRLLE DSFKLHATLN  120
SSQKQALAEQ LSLEPRQVEV WFQNRRARTK LKQNEVDCEF LKKCCESLTD ENKRLKKELQ  180
ELQSAKAGAS SPLFIQLQKA TTCPSCEKIM RTSDEGKNAG VNTDVVLKNN KWQRRFNATN  240
EPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453212.11e-179homeobox-leucine zipper protein HAT22
RefseqXP_015384448.11e-179homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-53HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLV4UJW11e-178V4UJW1_9ROSI; Uncharacterized protein
STRINGXP_006453212.11e-179(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2397433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-53HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]