PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010348m
Common NameCICLE_v10010348mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 220aa    MW: 24445.5 Da    PI: 4.602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010348mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-192373155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +k +g+Wv+eIr p++   r r++lg++ t+e+Aa+a +aa  +l+g
  Ciclev10010348m 23 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYETPEKAARAFDAALFCLRG 73
                     79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-122373IPR001471AP2/ERF domain
CDDcd000187.30E-292383No hitNo description
SMARTSM003802.8E-352487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-302482IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-202482IPR016177DNA-binding domain
PROSITE profilePS5103222.6422481IPR001471AP2/ERF domain
PRINTSPR003671.8E-92536IPR001471AP2/ERF domain
PRINTSPR003671.8E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVKTTEKEQQ QPRSSSSASR SEPKYKGVRK RKWGKWVSEI RLPNSRERIW LGSYETPEKA  60
ARAFDAALFC LRGRDAKFNF PENPPSELDV TGPGPEGARA RSLTPQEIQV IAARFANEEP  120
PRSSVDHHAN SSNNNNNNNC TSSSSDGGAV HLDSDSTIDW SLWDMLDSNE GASDFGFYSG  180
MDHMSDELYP SATAEPTIDD INEEDQNAFS QTSSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1424811472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KGVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452945.11e-163ethylene-responsive transcription factor ERF017
TrEMBLV4UPI91e-161V4UPI9_9ROSI; Uncharacterized protein
STRINGXP_006452945.11e-162(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-48ERF family protein