PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10010373m

Common Name

CICLE_v10010373mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 147aa MW: 16608.7 Da PI: 8.2263

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10010373m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.3	1.1e-37	1	101	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++r+kC++ C lap fpa++ ++f+n+hklFG+sn++k+++++++++r++a++s++ e+++r +dPv+G++gv+++l++q+e ++el Ciclev10010373m 1 ACASCKHQRKKCEETCELAPFFPASRYREFQNAHKLFGVSNIQKIINSVDPSQRKEAAESILIEGNIRSNDPVHGCLGVVRNLKSQIEYYEKEL 94 7********************************************************************************************* PP DUF260 95 allkeel 101 +++++l Ciclev10010373m 95 GAVNQQL 101 9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.1E-35	1	98	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	25.246	1	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
ACASCKHQRK KCEETCELAP FFPASRYREF QNAHKLFGVS NIQKIINSVD PSQRKEAAES 60 ILIEGNIRSN DPVHGCLGVV RNLKSQIEYY EKELGAVNQQ LPFFRDKEKQ HQHHAAPRAS 120 RKQPLEFGSD EEEESVDVSS LKGKKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-26	2	101	12	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-26	2	101	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475549.1	1e-79	LOB domain-containing protein 22-like
Swissprot	Q9LRW1	5e-40	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2H5PIN1	1e-103	A0A2H5PIN1_CITUN; Uncharacterized protein
STRING	XP_006451481.1	1e-104	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	7e-42	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Ciclev10010373m
Entrez Gene	18054434

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]