PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10010448m

Common Name

CICLE_v10010448mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 271aa MW: 29872.6 Da PI: 7.242

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10010448m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Ciclev10010448m 89 FSCNYCQRKFYSSQALGGHQNAH 111 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.27E-6	86	116	No hit	No description
PROSITE profile	PS50157	11.427	89	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MESLSKDPSP SEASSIISTP EENKVGDHEE EAKATLSFDL NLDRSDSDDQ GFNQELNLID 60 SLNNTGSSSQ ISSETPHATN DHPSEQRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR 120 GQRIGTYTAA SPFAFGQPYL HQNHYSSISS LPLHGAAYNR SLGIQVHSMI HKPSHTSTSH 180 GNGNIYGHNN WSRPPIEQQP AIGRLSSMEN YYSTAAAATS SRRFSLVRNM MGSSSQVDHG 240 ATRNYWWENG GGGLKNNQEE MKKLDLSLKL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450313.1	0.0	zinc finger protein 3
Refseq	XP_006483451.1	0.0	zinc finger protein 3-like
TrEMBL	A0A2H5NW01	0.0	A0A2H5NW01_CITUN; Uncharacterized protein
TrEMBL	V4TSL2	0.0	V4TSL2_9ROSI; Uncharacterized protein
STRING	XP_006483451.1	0.0	(Citrus sinensis)
STRING	XP_006450313.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-55	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10010448m
Entrez Gene	18053789