PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10010497m

Common Name

CICLE_v10010497mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 189aa MW: 21226 Da PI: 6.3858

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10010497m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.6	1.1e-22	141	188	2	49
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 + +++l dl yF+lpi++AA+ +++c+Tv+K+iCR+ G++RWPhRk+ Ciclev10010497m 141 TGKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKV 188 5689*******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.585	131	188	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-19	143	188	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MADPRAIVPY HDPHDNSYTE DIFNFINNPN PTFADLSLFE EPSSIPHSTN NPQSGGIITD 60 AGDPFDDPLF WDIGNNCNAG SFQAGPSGNQ AEMSDRGTPA IENAANMKAF PRWPVPPEPY 120 LCSCCLVLRE IIHTNVQRER TGKLTLRDLM IYFHLPIEEA ARRMKLCPTV VKKICRRDGL 180 HRWPHRKV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB573149	0.0	AB573149.1 Citrus unshiu genomic DNA, polyembryony locus, cultivar: Miyagawa wase.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006474671.1	5e-97	uncharacterized protein LOC102621663
TrEMBL	A0A2H5NBB2	1e-140	A0A2H5NBB2_CITUN; Uncharacterized protein
STRING	XP_006453027.1	1e-139	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Ciclev10010497m
Entrez Gene	18055737