PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010524m
Common NameCICLE_v10010524mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 360aa    MW: 41510.5 Da    PI: 8.9151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010524mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.51.7e-46641892128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      ppG+rF+P+d elvv+yL++k+ +++l+  + ik v++y+++P++L +++k+ +e ewyfF++rd+ky++g r+nra+++gyWkatg dk+v++
  Ciclev10010524m  64 PPGYRFKPHDGELVVYYLRRKILNQPLPP-NQIKVVELYRFNPNTLTERYKSlGEMEWYFFTPRDRKYRNGLRPNRAAADGYWKATGADKPVKH 156
                      9*************************999.77**************9666664778************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++lvg kk Lvfykg+apkg kt+W+mhey +
  Ciclev10010524m 157 -NDSLVGFKKALVFYKGKAPKGDKTNWIMHEYIV 189
                      .999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5661215IPR003441NAC domain
PROSITE profilePS5100553.66163215IPR003441NAC domain
PfamPF023652.6E-2564188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKDQKQKEQL GVEGKNPNGQ NPCGENPNGE SPKKQSDDAS LVRHPVKSTG HHLIADDSYF  60
DSFPPGYRFK PHDGELVVYY LRRKILNQPL PPNQIKVVEL YRFNPNTLTE RYKSLGEMEW  120
YFFTPRDRKY RNGLRPNRAA ADGYWKATGA DKPVKHNDSL VGFKKALVFY KGKAPKGDKT  180
NWIMHEYIVN NPPQKQKGRN DMRLDDWVLC RIYKKTKQSA KASTRKRENS EEDQQSRSEV  240
ATQSQDSEQI SVDEKAKMLP KTEIFKPEGL GIFDVPDYYN QGRFFSAYDN VLLSCQSPYA  300
NFQDGHQGNS QNWLPLVPQL GFQQMLHHNP TWESPMKPEE FGYLPFSDLP SEDNCFTNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-536222114174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453411.10.0NAC transcription factor 29
RefseqXP_024953202.10.0NAC transcription factor 29-like
SwissprotK4BWV21e-58NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLV4UVG00.0V4UVG0_9ROSI; Uncharacterized protein
STRINGXP_006474629.10.0(Citrus sinensis)
STRINGXP_006453411.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17542310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-60NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]