PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10010545m

Common Name

CICLE_v10010545mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 528aa MW: 59711 Da PI: 7.028

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10010545m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144	8.1e-45	61	187	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppG+rF+P+d el+v+yL++k +++l+ + ikev++yk++P +L +k+k +e+ewyfF++r++ky++g+r+nra+ +g+Wkatg dk++++ Ciclev10010545m 61 PPGYRFKPHDTELLVHYLRRKRMNEPLPP-NRIKEVHLYKFNPDTLSEKYKPfGENEWYFFTPRERKYKNGTRPNRAAGDGFWKATGADKPIKN 153 9***********************999.77**********9555444899*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ +vg kk Lvfy g+ p+g kt+W+mhe+rle Ciclev10010545m 154 -DEVVVGFKKALVFYMGKPPRGDKTEWIMHEFRLE 187 .999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-55	59	212	IPR003441	NAC domain
PROSITE profile	PS51005	53.319	60	212	IPR003441	NAC domain
Pfam	PF02365	1.4E-23	61	186	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MPDRKQGDKD QDPNGHDRNG KNPNGQGPKG KRPIDHIHDA SPPVKNRMNA AQGPEFDDSF 60 PPGYRFKPHD TELLVHYLRR KRMNEPLPPN RIKEVHLYKF NPDTLSEKYK PFGENEWYFF 120 TPRERKYKNG TRPNRAAGDG FWKATGADKP IKNDEVVVGF KKALVFYMGK PPRGDKTEWI 180 MHEFRLEGPP RTRISGDDMR LDDWVLCKIY KKRDQDRSKL SSSRPSTSQR DDSISGQDDP 240 QSDTEFQDNG AIDMGVEDSA TLPSEIFMPH GPEGPRIIDM SGCYNQGGFL NSYDDTFIYH 300 QSHFVNHDVP YSQGRVPEMP NYNVPYAQGR ITGMPNHNVP YSQGRLPRLA IHDVSDSQGR 360 FPGMTNQNVS ISVSQGRFPA IVPYSYNNPL GQRSPWTQHL MIPTANQNPN EAAESSAAAA 420 RARPFQAYPR QHMFTTSNRN PNQPAESSSA VAARPFQTFP HQHMFATSNQ SSNQVAESSS 480 DGAARPFQAL ESDMKFEQLN ECPPDDFLKD PSDDNCFDPD YHNSGKF*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MPDRKQGDKD QDPNGHDRNG KNPNGQGPKG KRPIDHIHDA SPPVKNRMNA AQGPEFDDSF  60
PPGYRFKPHD TELLVHYLRR KRMNEPLPPN RIKEVHLYKF NPDTLSEKYK PFGENEWYFF  120
TPRERKYKNG TRPNRAAGDG FWKATGADKP IKNDEVVVGF KKALVFYMGK PPRGDKTEWI  180
MHEFRLEGPP RTRISGDDMR LDDWVLCKIY KKRDQDRSKL SSSRPSTSQR DDSISGQDDP  240
QSDTEFQDNG AIDMGVEDSA TLPSEIFMPH GPEGPRIIDM SGCYNQGGFL NSYDDTFIYH  300
QSHFVNHDVP YSQGRVPEMP NYNVPYAQGR ITGMPNHNVP YSQGRLPRLA IHDVSDSQGR  360
FPGMTNQNVS ISVSQGRFPA IVPYSYNNPL GQRSPWTQHL MIPTANQNPN EAAESSAAAA  420
RARPFQAYPR QHMFTTSNRN PNQPAESSSA VAARPFQTFP HQHMFATSNQ SSNQVAESSS  480
DGAARPFQAL ESDMKFEQLN ECPPDDFLKD PSDDNCFDPD YHNSGKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	59	213	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	59	213	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	59	213	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	59	213	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	59	213	19	169	NAC domain-containing protein 19
3swm_B	2e-53	59	213	19	169	NAC domain-containing protein 19
3swm_C	2e-53	59	213	19	169	NAC domain-containing protein 19
3swm_D	2e-53	59	213	19	169	NAC domain-containing protein 19
3swp_A	2e-53	59	213	19	169	NAC domain-containing protein 19
3swp_B	2e-53	59	213	19	169	NAC domain-containing protein 19
3swp_C	2e-53	59	213	19	169	NAC domain-containing protein 19
3swp_D	2e-53	59	213	19	169	NAC domain-containing protein 19
4dul_A	1e-53	59	213	16	166	NAC domain-containing protein 19
4dul_B	1e-53	59	213	16	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453417.1	0.0	NAC transcription factor 25
TrEMBL	V4UQR7	0.0	V4UQR7_9ROSI; Uncharacterized protein
STRING	XP_006474630.1	0.0	(Citrus sinensis)
STRING	XP_006453410.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17542	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-59	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Ciclev10010545m
Entrez Gene	18054147