PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010568m
Common NameCICLE_v10010568mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 144aa    MW: 16565.5 Da    PI: 9.9496
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010568mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.41.9e-1225278128
              NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                      t++gyW+ t kd ++ + ++ l+g+kk L+fy +g  +k   tdW mhey++
  Ciclev10010568m   2 TNAGYWHITSKDSQIEA-TNGLTGTKKFLTFYrRGLPRKEFITDWGMHEYHI 52 
                      789*************9.8889**********5567777789********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.74170IPR003441NAC domain
PfamPF023651.2E-6252IPR003441NAC domain
SuperFamilySSF1019411.09E-15270IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
RTNAGYWHIT SKDSQIEATN GLTGTKKFLT FYRRGLPRKE FITDWGMHEY HIKNDASYKR  60
EFVLCCIKRK WNKKKKSGIS TIDEGESSQQ LVFPPHQSPS DRSISNGIHS EKNTPTIPPQ  120
QSQNHNSIYY PQSITNDPPT QLSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024039343.12e-76NAC domain-containing protein 74-like
TrEMBLV4WEL61e-103V4WEL6_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006451759.11e-104(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-11NAC family protein