PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011085m
Common NameCICLE_v10011085mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 823aa    MW: 89784.4 Da    PI: 6.5063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011085mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.51.8e-1264468032374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLl+cAeavs+++le+a+++L ++s+l++p+g++ qR+aayf eA++arl++s+ ++y+alp+ +++  ++++ ++a+++f+ +sP++kfsh
  Ciclev10011085m 446 LTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQT--HTQKMVSAFQVFNGISPFVKFSH 537
                      579************************************************************999998..5899999**************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      +taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfef + va+++ +l
  Ciclev10011085m 538 FTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFAEKLGLPFEFCP-VAEKVGNL 626
                      ******************************************************....***************************.7******* PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++e+L+++++Ea+aV++    h+l+d ++s ++    +L l+++l Pkvv+vveq+++  ++sFl rf+ea++yysalfdsl a++++eseer+
  Ciclev10011085m 627 DPERLNISKREAVAVHWLQ--HSLYDVTGSDTN----TLCLLQRLAPKVVTVVEQDLSP-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERH 713
                      ******************9..999999999999....********************98.899******************************* PP

             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++ dgy++ e++g+l lgWkd  L+++SaWr
  Ciclev10011085m 714 VVEQQLLSREIRNVLAVGGPSRSGDVK-FHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWR 803
                      *********************888877.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.653419783IPR005202Transcription factor GRAS
PfamPF035146.4E-124446803IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MAAACGLRVN NNNNNNNNNG CNNNNSNSII SGGGGDDHQS PTIMTSASNS TSGSNNEGKM  60
VRKRTASEME VQQQQLYSGS SDYYRSRLPR RNNPINQAPT ATPSAIPNYS TMSSFNDNVN  120
MSTLTLPPSS LINNVTSGAS GFLSTATSAA TRTTTNFSCI DNLSPHNNHQ QPQPPPPAVC  180
GFSGLPLFPP ADHHQRNRNA ASIGLIPAAP SCTSANNLAS SMEDSSATAW IDGIIKDLIH  240
NSANVSIPQL IHNVREIIFP CNPNLAALLE YRLRSLNSEP LLERSRNKDA ALPLHMLQRA  300
NYYINNNNTP QQQQQQQQGS SGLTLNLDNV SNYSLQDSSF LNWPGLTPLP PHIHEHHPSA  360
VTASLALTQV QPQPQPQPQP QPQPQPQELH QQQQEDQNEN SSPVETMTAA TTAPTPPSLA  420
VVNASIREKK EEIRQQKRDE EGLHLLTLLL QCAEAVSADN LEEANKMLLE ISQLSTPYGT  480
SAQRVAAYFS EAMSARLVSS CLGIYAALPS LPQTHTQKMV SAFQVFNGIS PFVKFSHFTA  540
NQAIQEAFER EDRVHIIDLD IMQGLQWPGL FHILASRPGG PPYVRLTGLG TSMEALEATG  600
KRLSDFAEKL GLPFEFCPVA EKVGNLDPER LNISKREAVA VHWLQHSLYD VTGSDTNTLC  660
LLQRLAPKVV TVVEQDLSPA GSFLGRFVEA IHYYSALFDS LGASYGEESE ERHVVEQQLL  720
SREIRNVLAV GGPSRSGDVK FHNWREKLQR SGFKGISLAG NAATQATLLL GMFPCDGYTL  780
VEDNGTLKLG WKDLCLLTAS AWRPLIHHPC NNINAISTRY SH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04298043380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429683.20.0protein SCARECROW
RefseqXP_006481279.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLV4S6380.0V4S638_9ROSI; Uncharacterized protein
STRINGXP_006481279.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81642640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein