PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011338m
Common NameCICLE_v10011338mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 595aa    MW: 67679.3 Da    PI: 6.8999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011338mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.6e-30141226187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Ciclev10011338m 141 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 226
                      8*************************************999*****************************98..55667*******85 PP
2trihelix60.54.1e-19441516275
         trihelix   2 WtkqevlaLiearremeerlrrg..klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                      Wt++e+  Li++r+ me r++++  +++++lWeev++km   g+e+++ +Ck+kw+ +n+++ k+k+g +k+++es
  Ciclev10011338m 441 WTDSETTRLINLRTGMEARFQQSgcNSQEALWEEVASKMICLGYEKNALMCKDKWDCINNYMSKTKAGGNKKRKES 516
                      *********************9655699***************************************999875554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.55138201IPR001005SANT/Myb domain
PROSITE profilePS500906.98140199IPR017877Myb-like domain
PfamPF138371.6E-20141227No hitNo description
CDDcd122038.32E-20141206No hitNo description
PROSITE profilePS500906.342433495IPR017877Myb-like domain
SMARTSM007177437501IPR001005SANT/Myb domain
PfamPF138374.7E-14440514No hitNo description
CDDcd122038.72E-21441506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MEMEDHHPHS HQQQPQPQPQ HEYGMPDLRQ FITNRPSHHF PGIPQAAAAE LFPGHHRNLT  60
PQQGHHHHRH HHYEMLMMPR GLQDFTTPAP TTTTTSAAAN NVNNTTSNNT VTTASVSTPP  120
SFSGFEGDVA ASFGGDGGNG RWPRQETLTL LEIRSRLDSK FKEANQKGPL WDEVSRIMSE  180
EHGYQRSGKK CREKFENLYK YYKKTKEGKA GRQDGKHYRF FRQLEALYGD TSNSVSFQET  240
HLVGSSSLRF NHSTTQHQEP NFHSSSHQNK LCDNSLSLSN NSSEFNSSSS DDDDNDLSTM  300
ENDSTEKRRK KRGGRSWKAK IKEFIDSQMR KLMEKQEAWL EKLTKTLEQK EQERVLREEE  360
WRRQEQDRID KEHKFWAKER AWIESRDAAL MEALQNLTGK QLKAPSSTEE LMAAAVDADD  420
DQLQNNSDTN NGETVSNKYS WTDSETTRLI NLRTGMEARF QQSGCNSQEA LWEEVASKMI  480
CLGYEKNALM CKDKWDCINN YMSKTKAGGN KKRKESYSRS SSGYLPSSES CLYSQGTAYE  540
TARLQLNDSS SPGAASNSNV GNNAVSDSCF RFLMADGDHL WENYGLRLSN GENQ*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}.
UniprotTISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430288.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-143PTL_ARATH; Trihelix transcription factor PTL
TrEMBLV4S7R90.0V4S7R9_9ROSI; Uncharacterized protein
STRINGXP_006430288.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-109Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]