PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011446m
Common NameCICLE_v10011452mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 536aa    MW: 58929 Da    PI: 8.8294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011446mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-1760106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av  + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Ciclev10011446m  60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 106
                      688*****************************.************986 PP
2Myb_DNA-binding59.11e-18112158148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++ ++v ++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Ciclev10011446m 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 158
                      79******************************.*************97 PP
3Myb_DNA-binding568.8e-18164207146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
  Ciclev10011446m 164 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 207
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.55155106IPR017930Myb domain
SMARTSM007171.2E-1459108IPR001005SANT/Myb domain
PfamPF002491.5E-1560106IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-1561116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-2062115IPR009057Homeodomain-like
CDDcd001674.80E-1363106No hitNo description
PROSITE profilePS5129431.365107162IPR017930Myb domain
SuperFamilySSF466891.25E-31109205IPR009057Homeodomain-like
SMARTSM007171.0E-17111160IPR001005SANT/Myb domain
PfamPF002497.1E-18112158IPR001005SANT/Myb domain
CDDcd001671.58E-15114158No hitNo description
Gene3DG3DSA:1.10.10.602.0E-27116165IPR009057Homeodomain-like
SMARTSM007171.3E-16163211IPR001005SANT/Myb domain
PROSITE profilePS5129422.781163213IPR017930Myb domain
PfamPF002495.9E-16164207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-23166213IPR009057Homeodomain-like
CDDcd001678.46E-13166209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAEVKLEEEC CLENKQLTAA SSSSLSEGSS SAILKSPGVS SPATTSPTHR RTTGPIRRAK  60
GGWTPEEDET LRNAVSTFKG KSWKKIAEFF PDRSEVQCLH RWQKVLNPDL VKGPWTQEED  120
DKITELVSKY GPTKWSVIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLE EELALMNAHR  180
IHGNKWAEIA KVLPGRTDNS IKNHWNSSLK KKLDFYLATG KLPPVAKSSL QNGTKDTSQS  240
TATENLVCSN KDSDSAAQTS SGTTDIGKPD EEGGKDRLEP SALVPDMATS SSIRPNESMD  300
SEGLECNPES PNIDLTCSES MPRLENCTVN CEFVEDKVTG TQKQVGTPTY GSLYYVPPEL  360
KSFILLDKDT SNRHSVHHDY NSSPITSPIS FFTPPCVKGS GLSSPSPESI LKIAAKTFPY  420
TPSIFRKRKP VSQAQLDAKK IGKVDGVSGS DRFCLSGKQE SNQNNSKNSR FQDASPSGSI  480
EPTGMTFNAS PPYRLRSKRT AVFKSVERQL EFTSNKEKGD RNANFVKQSV KGTSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-68592135159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-68592135159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429084.10.0transcription factor MYB3R-5
RefseqXP_006429085.10.0transcription factor MYB3R-5
RefseqXP_006480818.10.0transcription factor MYB3R-5
RefseqXP_006480819.10.0transcription factor MYB3R-5
RefseqXP_006480820.10.0transcription factor MYB3R-5
RefseqXP_024037722.10.0transcription factor MYB3R-5
SwissprotQ6R0321e-175MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2H5NYB10.0A0A2H5NYB1_CITUN; Uncharacterized protein
TrEMBLV4US040.0V4US04_9ROSI; Uncharacterized protein
STRINGXP_006480818.10.0(Citrus sinensis)
STRINGXP_006429084.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-166myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]