PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011458m
Common NameCICLE_v10011458mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 533aa    MW: 60571.5 Da    PI: 4.6748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011458mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.29.4e-471705313374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL +  eav++++ ela+ ++  ls+ asp+g+ ++Rla  +    +    ++++ l+     +e+     ++  aa+k+f++++P+ +f+h+
  Ciclev10011458m 170 HLLQAYGEAVEKEQRELADVIIRCLSDKASPAGEILERLAYNL----SPDFEKKGDYLM-----QES----RKNFEAAFKAFYQIFPYGRFAHF 250
                      8899999********************************9875....555555333333.....333....356778999************** PP

             GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak 184
                      +aN+aIle++  + e+vHi+Dfd+++G+QWp++++a+a +     +lR+T v+ ++s+     ++ + eet+++L ++A+ +g++++ + +   
  Ciclev10011458m 251 AANSAILESIPDDaEHVHIVDFDMGEGIQWPSMIEAMARQ---NRTLRLTSVKIEDSEfarvpRQWSFEETRKQLCDYARDFGLKLKVEEM--- 338
                      **********8877************************86...457*******9888899999999*********************9997... PP

             GRAS 185 rledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqe.adh..nsesFlerflealeyysalf 268
                      ++e+l ++e++ k+    +E  + n++++l ++  +s  ++++  e+L++ k++  +   +v++ + + ++   +s+ F   f   le+y a++
  Ciclev10011458m 339 DFEEL-VWEMKRKKkgcsKEWSVFNCIVELPHMG-RSR-SRKHVIEFLQVAKEMLCRsrgIVTLGDGDaCEKviGSSGFGSFFEGYLEHYQAVL 429
                      99999.777777777999***************8.333.444479********96544459*****996444579******************* PP

             GRAS 269 dsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvl 360
                      +s+++++p++   +r+ +E  ++++ i++     g    ++ e+ ++  +    +G+++ ++s+   ++ak l++  +s + ++  +++++++l
  Ciclev10011458m 430 ESMKTSFPTQLaGARMAMECLFVAPYISS----HGWL--QKWEEIRQGYHLQAGFGLEKCEVSKGFLMEAKELMKGESSYEVTIGgQSKNEIIL 517
                      *******9997799*****9988887765....4544..5556788888899999********************999665666678899**** PP

             GRAS 361 gWkdrpLvsvSaWr 374
                       W++ pLv vSaWr
  Ciclev10011458m 518 EWRGTPLVRVSAWR 531
                      *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.637142510IPR005202Transcription factor GRAS
PfamPF035143.2E-44170531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MGVRHHNSTQ TKFSLIPFLS YSFSIIIKLN MTQQEFLQPS WPFHTVINST LDDELGTCDF  60
NFDDDTSDYS LTSNLSYLFS NEMTPFPPCD DELQAMMNEF SMELGNFESA FSDKVKDFGT  120
SFDNSEGSLS LLSQVSSPST PTKSSEASMD STVTFLGEDM EIDNQLGVLH LLQAYGEAVE  180
KEQRELADVI IRCLSDKASP AGEILERLAY NLSPDFEKKG DYLMQESRKN FEAAFKAFYQ  240
IFPYGRFAHF AANSAILESI PDDAEHVHIV DFDMGEGIQW PSMIEAMARQ NRTLRLTSVK  300
IEDSEFARVP RQWSFEETRK QLCDYARDFG LKLKVEEMDF EELVWEMKRK KKGCSKEWSV  360
FNCIVELPHM GRSRSRKHVI EFLQVAKEML CRSRGIVTLG DGDACEKVIG SSGFGSFFEG  420
YLEHYQAVLE SMKTSFPTQL AGARMAMECL FVAPYISSHG WLQKWEEIRQ GYHLQAGFGL  480
EKCEVSKGFL MEAKELMKGE SSYEVTIGGQ SKNEIILEWR GTPLVRVSAW RS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024037830.10.0nodulation-signaling pathway 2 protein
TrEMBLV4SPV70.0V4SPV7_9ROSI; Uncharacterized protein
STRINGXP_006429467.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-20GRAS family protein