PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011501m
Common NameCICLE_v10011501mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 517aa    MW: 55896.7 Da    PI: 7.2852
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011501mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-30178236259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
  Ciclev10011501m 178 NDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 236
                      8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-32162238IPR003657WRKY domain
SuperFamilySSF1182902.48E-27170238IPR003657WRKY domain
PROSITE profilePS5081128.851172238IPR003657WRKY domain
SMARTSM007744.4E-37177237IPR003657WRKY domain
PfamPF031066.1E-27178236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGEVREENER LKKMLEQIEK DYKSLQLRFF DILQKADPAK KSTNSTQYFS HDDQIMESEL  60
VSLCLGRSSS PGEVKKEERT SNNASKSSRK NGDDEELKAS LNLALDPKIQ PSLELGVSNL  120
SPENSSEETK EEEAGEAWPP SKVLKTMRGN GDDEVSPQSN VKRARVSVRA RCDAPTLNDG  180
CQWRKYGQKI AKGNPCPRAY YRCTVAPGCP VRKQVQRCAE DMSILITTYE GTHSHPLPVS  240
ATAMASTTSA AASMLLSGSS TSQPGLSSTA PTTTAATEPN GLNFNIYDTS RTKPFYSSNS  300
TSALFPTITL DLTNPSSSFS HFNRFSSSFA SNPRFPSTNL NFSCSSESTL LPTLWGNGFQ  360
AYGPYNQTPN GSLLNLGKNS QEQFYQSFMD KNQNQQAATA SASQQALTET LTKAMTSDPN  420
FRSVIAAAIS TMVGGNATNN GDQENFGQNL MQNNTPPNNS ILSQNGKACA SGYFNGLSTL  480
NSQTGSSSLL QSSLPFPIFK SSPTPTNDNN NKGQSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22164238174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431098.20.0probable WRKY transcription factor 72
SwissprotQ9LXG81e-116WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLV4S9X40.0V4S9X4_9ROSI; Uncharacterized protein
STRINGXP_006431098.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-95WRKY DNA-binding protein 72