PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011531m
Common NameCICLE_v10011531mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 506aa    MW: 56195.8 Da    PI: 4.7275
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011531mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.2e-34711622102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++++++d +l+ +isw ++g+sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++g+++ll+
  Ciclev10011531m  71 FLSKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDR---------WEFANEAFQRGRRHLLK 155
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+ks
  Ciclev10011531m 156 NIRRRKS 162
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.81E-3466160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5667160IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3668160IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-3071160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-177194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-17109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340110134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-17122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDKEEQNYPK SPPNTAVITS SVPEATPLSM ETIAFPTTVE ELEAFSSFAT TPAADVPQPL  60
DCLHGNPIPP FLSKTFDLVD DTSLDPIISW GSTGESFVVW DPLEFSRLIL PRNFKHNNFS  120
SFVRQLNTYG FRKIDTDRWE FANEAFQRGR RHLLKNIRRR KSPQSQQIGT YIGPFSEAEK  180
SGVQGDIEQL RKERGMLMQE VVELHQQHRG TASHMEAINQ RIHAAEQRQK QMVSFLAKLL  240
QNPAFLARLK QKKEQGEIDS SRMKRKFVKH QPHELGKSDS SVEGQIVTYR PDWGNLTIPN  300
VVPESHHVPV ERSPDYLLDG MVGIGSGRED MPFQFENVAS VDLAVSDELA VPGGFTKAPE  360
QMGEGASSSG IKDPHFKEKN VMSPQQEVRS ECFVSFPQDL MKENIHDVSS PGIECIATQE  420
DIWNLGFDAT AGMSSSSNEL LGNLSTSDVP DLGMSGGLSD IWDLSSLQAA GGSSIDLWSA  480
DEPHFVDPES QASPKEDDRP KDMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-226816026129Heat shock factor protein 1
5d5v_B3e-226816026129Heat shock factor protein 1
5d5v_D3e-226816026129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246254ARLKQKKEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038192.10.0heat stress transcription factor A-3
TrEMBLV4UV240.0V4UV24_9ROSI; Uncharacterized protein
STRINGXP_006430299.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109502529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-105heat shock transcription factor A3