PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011554m
Common NameCICLE_v10011554mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 497aa    MW: 54586.8 Da    PI: 7.4156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011554mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1660104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Ciclev10011554m  60 RERWTEEEHKKFLEALKLFGRA-WRKIEEHVG-TKTAVQIRSHAQKF 104
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1754108IPR009057Homeodomain-like
PROSITE profilePS5129421.19355109IPR017930Myb domain
TIGRFAMsTIGR015578.2E-1758107IPR006447Myb domain, plants
SMARTSM007173.7E-1359107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-960100IPR009057Homeodomain-like
PfamPF002496.8E-1460103IPR001005SANT/Myb domain
CDDcd001672.49E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAVQDECGGN HSNSVFSAAN GIESSSGLHT VTGLEVKDQF SCGNDFAPKP RKPYTITKQR  60
ERWTEEEHKK FLEALKLFGR AWRKIEEHVG TKTAVQIRSH AQKFFSKVVR ESNGCSTSPV  120
EPVEIPPPRP KRKPMHPYPR KLAHPPVKES LNPELSRTSL SPILSVSERE NQSPTSVLFA  180
IGSDAFGSSD SNSPNGSLSP VSSAVPEQLG GLTLSHPSSS PEERGSPSSD PVTPGSVTDE  240
QSPKCVLKMG LSPQRFDKEV SDVRASSRSL KLFGTIVLVT DSQRLSSPTA GTCKLFESFP  300
SEALEGKPLQ LLPLEVMHTE SLSEDAKYAW RRTLPHGGSG AFSCMQSTDD DSNMVDTGSG  360
AHLPWWNFSH GLPYAVTPNN QQVQNLRLHS SVKEVQGREF KKEGSLTGSN SKSVNEEDSI  420
DKSSDVDSQS SRQSLDKEDK WPEVAFELKP SENSAFSVIR TRTDKHMKGF VPYKKRIVER  480
DNQLSAVGNG RDQREW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430409.10.0protein REVEILLE 1
TrEMBLV4UVE90.0V4UVE9_9ROSI; Uncharacterized protein
STRINGXP_006430409.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-53MYB_related family protein