PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011967m
Common NameCICLE_v10011967mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 380aa    MW: 41988.7 Da    PI: 7.8525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011967mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-16119164147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Ciclev10011967m 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 164
                      899*****************************.***********996 PP
2Myb_DNA-binding51.42.5e-16172214246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++++E+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Ciclev10011967m 172 RAFSEDEEERLMAAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 214
                      689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.062114165IPR017930Myb domain
SMARTSM007172.7E-14118167IPR001005SANT/Myb domain
PfamPF002497.5E-16119164IPR001005SANT/Myb domain
SuperFamilySSF466893.56E-27119212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-25120172IPR009057Homeodomain-like
CDDcd001675.05E-13122163No hitNo description
PROSITE profilePS5129425.968166220IPR017930Myb domain
SMARTSM007175.1E-13170218IPR001005SANT/Myb domain
PfamPF002497.2E-13172213IPR001005SANT/Myb domain
CDDcd001672.95E-10173213No hitNo description
Gene3DG3DSA:1.10.10.607.4E-20173219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MTLQQFHNST SCHKRKMNSM TNHYKNTINA NAPTIDSSMD MFAAVAHMGS LSASPRKNSG  60
HIVTSQNICY CDSSDHQKSD LAAGGDSDNN NKVDESVDGY EDMEDVKKMD GGLSKVCSRG  120
HWRPAEDSKL KELVALYGPQ NWNLIAEKLE GRSGKSCRLR WFNQLDPRIN KRAFSEDEEE  180
RLMAAHRVYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY REQSSAYYRR RKFLNQVVDD  240
KKLEAAVAAN DLEPNINNVH DISSSSVSFL DSSSPRKPSF QAPIGGCNWS YTNLITASEQ  300
GVSFGKDLFL GSTSSSSSNK LLSCENQTPF DFFSASQVTI TEPSASSSSS QSAAENKRGT  360
SHLEATISPP FIDFLGVGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-331192197107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955401.10.0transcription factor MYB35
TrEMBLV4SZ920.0V4SZ92_9ROSI; Uncharacterized protein
STRINGXP_006431175.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-75myb domain protein 105