PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012014m
Common NameCICLE_v10012014mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 368aa    MW: 42132.9 Da    PI: 7.0402
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012014mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-32197251155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Ciclev10012014m 197 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM 251
                      68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.3E-17195251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28196252IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23197252IPR006447Myb domain, plants
PfamPF002491.3E-8201250IPR001005SANT/Myb domain
PfamPF143793.4E-20282328IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNTQKLNFQE TFQKKHLDFG PPSQYFGDIQ QQQPWMMRTT TQQHQNLDHA RSPSTILSRF  60
ESPASAFYAT ERYMGFCQYD SQAAGNNSSQ FSRTCDSSQQ FHSYQSPGEI FSVLSAEQAV  120
PLEIPWNFYK SPEASCINPL GKQYSGPFDE HQDHRVSNDG YGLTSLSQQG YASHQEKQSP  180
RFSSSSSFST GPVITNKTRI RWTQDLHEKF VECVNRLGGA DKATPKAILK LMDSEGLTIF  240
HVKSHLQKYR MAKYVPEFPE GKLEKRNSLN DLPQIDVKAT LQIKEALQLQ LDVQRRLHEQ  300
LEIQRKLQLR IEEQGKHLQM LFDQQQKASK DHSKPQNLEK VPEDDPPFNF EGIEFSTSEN  360
SGNSHFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22197254259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429845.10.0myb family transcription factor PHL5
SwissprotQ0WVU34e-77PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLV4SVN80.0V4SVN8_9ROSI; Uncharacterized protein
STRINGXP_006429845.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-74G2-like family protein