PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012182m
Common NameCICLE_v10012182mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 327aa    MW: 35670.8 Da    PI: 4.6898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012182mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.8e-06299322123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ C++sF++   L++H +  H
  Ciclev10012182m 299 FPCKSCNRSFTTEGGLQSHTKAkH 322
                      89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.006299322IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741299326IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4299321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280301322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSTLMEFWGV EVKSGQPLKI NPGDNKIVHL SQASLGEIKK DKGSESVYLY LKVDDKKLVL  60
GTLSAQKFPQ LSFDLAIEKD FELSHNWKNG SVYFTGYKLR TEGTDDDDNS DSDEDKMDIR  120
LVSNGKPELQ AKPLSEKPIA VEPSASTAKQ NKKDVKPKQK ADGSDSDDSD LNTSSSDDDE  180
TSDDENPNLV NRDGSSDESS GELDESDDDE DDEGTDESES GDEDEETPKK AESNKKRPVE  240
SASKTHVPDK KAKFVTPQKT EERKGVSHIA TPHPSKKSAK TLANSDQTKQ QPRKSGSSFP  300
CKSCNRSFTT EGGLQSHTKA KHGAPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.9180.0abscission zone| flower| vegetative tissue
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430307.10.0histone deacetylase HDT1
TrEMBLV4SS410.0V4SS41_9ROSI; Uncharacterized protein
STRINGXP_006430307.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.14e-28histone deacetylase 2C