PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10012236m

Common Name

CICLE_v10011603mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 317aa MW: 35968 Da PI: 10.3525

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10012236m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4.1e-08	189	236	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d++ q+G g W+ I r + +Rt+ +++++w+++l Ciclev10012236m 189 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssSHRTPIDLRDKWRNLL 236 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-12	178	243	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.847	181	240	IPR017930	Myb domain
SMART	SM00717	2.5E-8	185	238	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.32E-16	187	246	IPR009057	Homeodomain-like
CDD	cd11660	3.25E-17	187	237	No hit	No description
Pfam	PF13921	1.9E-6	189	244	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MSDSSITALE SECKNDSLEK MVNCELHGTF KSKCEYQAPD MEKCPSSHDM DRFDELDSDD 60 NVLLSSILSK CKKRVKSTVL GTKVKRLRKP TKRYIEESSD LKPGSLMRGQ NVSTATLKDK 120 HPKVTPCNGS SKGSQVASES WLRGGRLKKR SPILGFESDD DIFSSDSDDD RVRKRKSKID 180 DRRKNQRMWT LSEVMKLIDG ISQFGVGKWT DIKRLLFSSS SHRTPIDLRD KWRNLLRASY 240 AHQKNKGEVD PKHAMRSLPK PVLCRIRELA TIHPYPRVPY SKKCNGDTDS SRHPIKAKSA 300 PFSSHGRNLR TTIKEQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	183	KRKSKIDDRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.3793	1e-166	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428745.1	0.0	uncharacterized protein LOC18039657 isoform X2
Refseq	XP_006428746.1	0.0	uncharacterized protein LOC18039657 isoform X2
Refseq	XP_006481484.1	0.0	uncharacterized protein LOC102617973 isoform X2
Refseq	XP_006481485.1	0.0	uncharacterized protein LOC102617973 isoform X2
Refseq	XP_015386899.1	0.0	uncharacterized protein LOC102617973 isoform X3
TrEMBL	A0A067DYJ3	0.0	A0A067DYJ3_CITSI; Uncharacterized protein
TrEMBL	A0A067DYY1	0.0	A0A067DYY1_CITSI; Uncharacterized protein
TrEMBL	V4SMT4	0.0	V4SMT4_9ROSI; Uncharacterized protein
STRING	XP_006481484.1	0.0	(Citrus sinensis)
STRING	XP_006428745.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	4e-24	TRF-like 6

Link Out ? help Back to Top
Phytozome	Ciclev10012236m
Entrez Gene	18039657