PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012285m
Common NameCICLE_v10012285mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 309aa    MW: 34592.5 Da    PI: 7.6472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012285mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-072872345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT++E +++ +a + + ++   +W ++a++++ g+t  +++  + 
  Ciclev10012285m 28 KWTPQENKQFENALAVYDKDtpdRWIKVAAMIP-GKTVGDVIKQYK 72
                     8********************************.****99988775 PP
2Myb_DNA-binding45.91.3e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Ciclev10012285m 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-42273IPR009057Homeodomain-like
PROSITE profilePS512939.6242479IPR017884SANT domain
SMARTSM007171.8E-82577IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-112781IPR009057Homeodomain-like
CDDcd001671.47E-62874No hitNo description
PfamPF002491.6E-62872IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-13127186IPR009057Homeodomain-like
PROSITE profilePS5129420.525129185IPR017930Myb domain
SuperFamilySSF466895.68E-17131184IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-17132184IPR006447Myb domain, plants
SMARTSM007173.0E-13133183IPR001005SANT/Myb domain
PfamPF002495.0E-12136180IPR001005SANT/Myb domain
CDDcd001678.94E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNRGIEILSP ASYLENSNWL FQESKGTKWT PQENKQFENA LAVYDKDTPD RWIKVAAMIP  60
GKTVGDVIKQ YKELEEDVSD IEAGLIPIPG YGNDSFTLEW VDSNQGYDGL KNFYGPGGKR  120
GSSTRPSDQE RKKGVPWTEE EHRQFLMGLK KFGKGDWRNI SRNFVTTRTP TQVASHAQKY  180
FNRQLTGGKD KRRSSIHDIT TVNLDETATS SSENNKPPSP SPSAAVIQLQ QQPKMVDMSN  240
EQFNWKSQNE GTAMLFNSMN GTAFMAPFCG ISSYGPKLQE QNLLGGNLNG SQFGAYSAYF  300
QMQSMQHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-162691873RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429310.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-115DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H5PE950.0A0A2H5PE95_CITUN; Uncharacterized protein
TrEMBLV4SU680.0V4SU68_9ROSI; Uncharacterized protein
STRINGXP_006429310.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-125MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]