PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012295m
Common NameCICLE_v10012295mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 307aa    MW: 34438.3 Da    PI: 8.8005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012295mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225476123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Ciclev10012295m 54 YSCSFCRREFRSAQALGGHMNVH 76
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-65180No hitNo description
PROSITE profilePS5015711.2195481IPR007087Zinc finger, C2H2
SMARTSM003550.00985476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEQAGYCWMW NKRKHDLNSH FPSTNSYDDS WEEQAFAEDA AGPLGGCIWP PRSYSCSFCR  60
REFRSAQALG GHMNVHRRDR ARLKQSSSSN PQNEIHHHDH QFQNNNDHHL QNNNHPFASL  120
GFHQYPSQQL CNFVYNPSPN SDPVVIASSS SPSRVVSAPP STQKTRPDKT FVIPSLSSPI  180
AQEQQHKRSP ISSPKSCSNS VADKNNSTIV KSACRVKADY VKTDLSVSLN LVVRRTRPTL  240
STGKEAAVGC KRRRTEASSL PFFLKPCSFD HDKDHLQSEE HKILNPSSIE DLDLELRLGD  300
PPPKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124976229superman protein
2l1o_A1e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429147.10.0zinc finger protein 10
TrEMBLV4SNY60.0V4SNY6_9ROSI; Uncharacterized protein
STRINGXP_006429147.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-27zinc-finger protein 10