PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012395m
Common NameCICLE_v10012395mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 286aa    MW: 31123.1 Da    PI: 8.8081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012395mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011111133123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Ciclev10012395m 111 YQCKTCNRCFPSFQALGGHRASH 133
                      9***********99999998887 PP
2zf-C2H213.80.00017192214123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  Ciclev10012395m 192 HECSICGAEFSSGQALGGHMRRH 214
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
PfamPF139128.4E-11110135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-8110133No hitNo description
SMARTSM003550.08111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-8187214No hitNo description
Gene3DG3DSA:3.30.160.607.8E-4190214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.5E-13191216IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743192214IPR007087Zinc finger, C2H2
SMARTSM003550.01192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGPKDQTQII MKGKRTKRPR PQSPLAMAMV YSCSSSLESG GEGERIFSTN SPTTSVEFAT  60
TTEQEEDMAN CLILLAQGDA KKISSSSSSH HLDQPATTSK AAAVATGLYV YQCKTCNRCF  120
PSFQALGGHR ASHKKPKVIN NNIEASKKAF VLMDEEDDRF SNMSTTLSLQ MANNRDAANL  180
CARTNNKANK VHECSICGAE FSSGQALGGH MRRHRAFTTS TTALSMGTSS SLDRQSQQAK  240
KPRNILQLDL NLPAPEDDRR ESKFAFASKE QVIIFSASPL VDCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11620KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428462.20.0zinc finger protein ZAT5
RefseqXP_006493540.10.0zinc finger protein ZAT5-like
TrEMBLV4SM300.0V4SM30_9ROSI; Uncharacterized protein
STRINGXP_006493540.10.0(Citrus sinensis)
STRINGXP_006428462.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.14e-64C2H2 family protein