PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10012506m

Common Name

CICLE_v10012506mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 262aa MW: 29030 Da PI: 9.3349

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10012506m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55	1e-17	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i+ + r tf kR+n +lKKA+E +LCd+ev++ii++++ Ciclev10012506m 10 PIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPR 51 6889999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.881	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-10	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-9	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.23E-17	6	80	No hit	No description
SuperFamily	SSF55455	2.09E-17	6	79	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-18	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MACEALKLEP IKHEKARLAT FKKRKNSLLK KAYEFATLCD VEVCIIIYGP RVKGQSLKPE 60 IWTSKEGQLT SIIRKYKKKI SAVDHGQQRT LSLAKFDESK TRQVDDAATM ARKKICVGDF 120 TTWDQGMDSF SEDQLKMILS TMDDKLKAAD GKLNMIKGDQ NLKNKAASRK LDHDHSNDAK 180 SLVNSQPGYE VSQKLPSDSS FMEIQCGGES GGTIPFTPLQ RQINWNSSLT MSPASSGVYD 240 GNAAQAKKSN DILKDQSSQE E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430718.1	0.0	agamous-like MADS-box protein AGL82
Refseq	XP_024037550.1	0.0	agamous-like MADS-box protein AGL82
TrEMBL	V4S8X5	0.0	V4S8X5_9ROSI; Uncharacterized protein
STRING	XP_006430718.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21055	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	4e-23	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Ciclev10012506m
Entrez Gene	18038338