PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012534m
Common NameCICLE_v10012534mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GeBP
Protein Properties Length: 257aa    MW: 29951.3 Da    PI: 9.4472
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012534mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57379.84.3e-2547141297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +f+r+w+e Dei +LqGl+d  a+ g     d+  fye +++ +s  +sk ql+eK+rrL+kKf+  ++++++g +++  + hd++ fels+k+
  Ciclev10012534m  47 KFHRIWTEPDEIRFLQGLLDS-ASLGLTFPRDLPIFYERFSNAMSQPYSKYQLSEKLRRLRKKFRVTSARISRGLNVTHLNFHDRNLFELSMKL 139
                      699*****************8.889999999*************************************************************** PP

           DUF573  96 Wg 97 
                      W 
  Ciclev10012534m 140 WS 141
                      *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-2648141IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDSLKPSSAS KSKLPIKRKS EQSHNQDQSI TTVDFTDPTN INPPPFKFHR IWTEPDEIRF  60
LQGLLDSASL GLTFPRDLPI FYERFSNAMS QPYSKYQLSE KLRRLRKKFR VTSARISRGL  120
NVTHLNFHDR NLFELSMKLW SPECLPTSPF GKISVCGGNV DVDFSSCGRK EKETIEEVAV  180
ARSVLDVFDE CLKEVRMIVA NQPKEEREKD FERRWREQRF AEFDVLTRRL RMKLCEVQTV  240
VLAYFKNNNI NLYLCT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430559.10.0probable transcription factor At4g00390
TrEMBLV4UVS30.0V4UVS3_9ROSI; Uncharacterized protein
STRINGXP_006430559.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-17DNA-binding storekeeper protein-related transcriptional regulator