PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012594m
Common NameCICLE_v10012594mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28414.5 Da    PI: 9.7332
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012594mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gklyeys+
  Ciclev10012594m  9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLYEYST 59
                     79***********************************************96 PP
2K-box95.58.3e-32781744100
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      ++ + ++++ +  ++ e+ kLk++ie L++++R+++G dLe+Lsl+eLq Leqq+++slk+ R++Kn+l++e+i++lqk+e++lq++n++L kk
  Ciclev10012594m  78 QQLVTNDAEPQGCWSLEYPKLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKNQLIHESISDLQKRERALQDQNNMLAKK 171
                      5566666777889********************************************************************************* PP

            K-box  98 lee 100
                      l+e
  Ciclev10012594m 172 LKE 174
                      986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.492161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-33288IPR002100Transcription factor, MADS-box
CDDcd002653.00E-41271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.64688178IPR002487Transcription factor, K-box
PfamPF014862.8E-2688172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTE  60
SSMERILERY ERNAYVEQQL VTNDAEPQGC WSLEYPKLKS RIEVLEKNIR NFMGGDLEPL  120
SLRELQYLEQ QIDTSLKRLR NRKNQLIHES ISDLQKRERA LQDQNNMLAK KLKEKERTVT  180
EQQNQMAQNS SPLMPTFPSL TIGGNIQVMM RGSIIDEPDE NQTRQNMRST VVPWWMHDHV  240
NHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-20170169MEF2C
5f28_B6e-20170169MEF2C
5f28_C6e-20170169MEF2C
5f28_D6e-20170169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430951.10.0truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S72e-98AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLV4T3U91e-180V4T3U9_9ROSI; Uncharacterized protein
STRINGXP_006430951.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-91AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]