PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012612m
Common NameCICLE_v10012612mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 241aa    MW: 27657.1 Da    PI: 9.7
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012612mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.26.1e-38301332135
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 
                      ++k+drhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++ +aikel +++ + +                         
  Ciclev10012612m  30 PVKRDRHSKICTAQGFRDRRVRLSIEIAREFFDLQDMLGFDKASQTLEWLFNKSRKAIKELIELKRPCN------------------------- 98 
                      579*************************************************************55555......................... PP

              TCP  96 kskksqksaasalnlakesrakarararertrekmriknk 135
                            +s++ + +lak+sr +ararar+rtrekm++k  
  Ciclev10012612m  99 -----GTSKQLMEKLAKKSRDQARARARQRTREKMFKKFA 133
                      .....455667799*********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.1E-343195IPR005333Transcription factor, TCP
PROSITE profilePS5136935.0233290IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.012110127IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAFTGNASAV VNREHYDHPS SFIRNEKPVP VKRDRHSKIC TAQGFRDRRV RLSIEIAREF  60
FDLQDMLGFD KASQTLEWLF NKSRKAIKEL IELKRPCNGT SKQLMEKLAK KSRDQARARA  120
RQRTREKMFK KFADTTPQIS TQIKACQESS SYVVSHDQVQ EPCSSTLACQ TQENQAPTDR  180
NQNPSSNFAH DQQNLEISKD TISCNTSNYN FNLPQNWDIV SAMPHQYTVC RAITKHESLN  240
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955808.11e-165transcription factor CYCLOIDEA-like
TrEMBLV4UWE61e-180V4UWE6_9ROSI; Uncharacterized protein
STRINGXP_006430819.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.28e-33TCP family protein