PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012626m
Common NameCICLE_v10012626mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 238aa    MW: 26801.5 Da    PI: 7.5037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012626mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-1066112354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+E+rRR+riNs +++Lr++l  +      Kl+Ka+ L ++v+ +++L
  Ciclev10012626m  66 KNHKEAEKRRRERINSHLNKLRSILSCN-----SKLDKASLLARVVQRVREL 112
                      58***********************997.....7***********9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.63463112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-866112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-966115No hitNo description
SuperFamilySSF474594.19E-1267125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1167121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-869118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.5E-4151214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQPENSELYR FLAQNGVGYY GFPGSACEFS SMMQQSFCSS SSYSFPLEVS GVTETTPEDR  60
ALAALKNHKE AEKRRRERIN SHLNKLRSIL SCNSKLDKAS LLARVVQRVR ELKEQTIELT  120
EVESFPSETD EITVLASSDY SSDGTLIFKA SLCCEDRSDL LPDIIEILKS LHLKTLKSEM  180
VTLGGRIRNV LIIAAEKDHS IESVHFLQNA LKSLLERSNS SDRSKRRRVL DHKIMIQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430538.11e-173transcription factor bHLH106
SwissprotO806749e-93BH106_ARATH; Transcription factor bHLH106
TrEMBLV4S8F11e-172V4S8F1_9ROSI; Uncharacterized protein
STRINGXP_006430538.11e-173(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]