PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10012754m

Common Name

CICLE_v10012754mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 211aa MW: 22056.8 Da PI: 7.0856

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10012754m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.8	2.3e-35	43	126	6	70
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssa 70 ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt ss+++ Ciclev10012754m 43 SSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpavavssstagptpmsSSPPS 126 789*********************************************************444444444444443333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.7E-30	44	115	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.466	45	99	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MASEMALQTH QNPNPNSVTP TTTESAAKTE LAHPRKRSSS SSSSTKDRHT KVNGRGRRVR 60 MPPLCAARIF QLTRELGHRS DGETIEWLLR QAEPSIIAAT GTGTVPAVAV SSSTAGPTPM 120 SSSPPSLSCC VQPLSVSSQG MFLAADAEPQ PNCRLDLCQP LGLQFAGNGY RHIPFTALLL 180 QPAVAAAAAA AEEAEESGGQ EDIKVTGDCH *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428735.1	1e-153	transcription factor TCP11
Swissprot	Q9SJK7	9e-44	TCP11_ARATH; Transcription factor TCP11
TrEMBL	V4SSN2	1e-152	V4SSN2_9ROSI; Uncharacterized protein
STRING	XP_006428735.1	1e-152	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	1e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10012754m
Entrez Gene	18039389