PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012760m
Common NameCICLE_v10012182mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 211aa    MW: 22624.2 Da    PI: 4.7302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012760mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-06183206123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ C++sF++   L++H +  H
  Ciclev10012760m 183 FPCKSCNRSFTTEGGLQSHTKAkH 206
                      89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.0E-5182205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741183210IPR007087Zinc finger, C2H2
SMARTSM003550.006183206IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDIRLVSNGK PELQAKPLSE KPIAVEPSAS TAKQNKKDVK PKQKADGSDS DDSDLNTSSS  60
DDDETSDDEN PNLVNRDGSS DESSGELDES DDDEDDEGTD ESESGDEDEE TPKKAESNKK  120
RPVESASKTH VPDKKAKFVT PQKTEERKGV SHIATPHPSK KSAKTLANSD QTKQQPRKSG  180
SSFPCKSCNR SFTTEGGLQS HTKAKHGAPA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.9180.0abscission zone| flower| vegetative tissue
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430307.11e-146histone deacetylase HDT1
TrEMBLV4S7T91e-146V4S7T9_9ROSI; Uncharacterized protein
TrEMBLV4SS411e-145V4SS41_9ROSI; Uncharacterized protein
TrEMBLV4SWW51e-145V4SWW5_9ROSI; Uncharacterized protein
TrEMBLV4T1Y61e-145V4T1Y6_9ROSI; Uncharacterized protein
STRINGXP_006430307.11e-145(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-21histone deacetylase 2C