PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012773m
Common NameCICLE_v10012016mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 208aa    MW: 24161.7 Da    PI: 8.8774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012773mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-062953123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     ++C+  dC+ s++rk++L+rH+ +H
  Ciclev10012773m 29 FRCSvdDCHASYRRKDHLTRHLLRH 53
                     89*********************99 PP
2zf-C2H216.32.9e-055883123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                     +kCp  +C++ F+ + n+krH +  H
  Ciclev10012773m 58 FKCPieNCNREFTIQGNMKRHVKElH 83
                     89********************9986 PP
3zf-C2H219.23.3e-0698122123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y C+   Cgk+F+  s L++H  +H
  Ciclev10012773m  98 YICQeiGCGKVFKYASKLRQHEDSH 122
                      89*******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-102555IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-62655No hitNo description
PROSITE profilePS501579.8272958IPR007087Zinc finger, C2H2
SMARTSM003550.00662953IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803153IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-65680IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.72E-75684No hitNo description
PROSITE profilePS5015710.6375889IPR007087Zinc finger, C2H2
SMARTSM003550.00155883IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806084IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-890122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-594122No hitNo description
SMARTSM003550.003398122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2498127IPR007087Zinc finger, C2H2
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SMARTSM003553.6130155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
SMARTSM0035520158179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDQYQVGRPP EKLHQVSLIH AIFRIERPFR CSVDDCHASY RRKDHLTRHL LRHQGKLFKC  60
PIENCNREFT IQGNMKRHVK ELHHEGTTST DSGDQKQYIC QEIGCGKVFK YASKLRQHED  120
SHVNLDSVEA FCSAPGCMKY FTNKQCLEAH IRSCHQYIPC EICGSMQLKK NIKRHVRTHE  180
ARDLSERIKC QFKGCLLSFS TVRSSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A8e-112117914156Aart
2i13_B8e-112117914156Aart
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038482.11e-148transcription factor IIIA isoform X2
TrEMBLV4SYN81e-152V4SYN8_9ROSI; Uncharacterized protein
STRINGXP_006430925.11e-127(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.17e-49transcription factor IIIA