PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012993m
Common NameCICLE_v10012993mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 156aa    MW: 17416.7 Da    PI: 8.6951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012993mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-115779527
                     --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                      C++f +tG+C++Gd+Ck+ H++
  Ciclev10012993m 57 VCSRFVKTGFCPFGDSCKYLHPK 79
                     5********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0082338IPR003604Zinc finger, U1-type
SuperFamilySSF576672.89E-15460No hitNo description
PfamPF062203.9E-10537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010315.0285280IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-55379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-75680IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-95779IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-75778IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTYF ARKRHLQGIQ HLRAKALWYD SLNETNQTYP DGFPKGVCSR  60
FVKTGFCPFG DSCKYLHPKN NPPQNSGNQG LRATGFTDIN ARSSSVDQRI YLAGGSSFPG  120
DMMRDSMGMS WGNLPPSLKP PPEGGYPLLP FVDWG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428241.11e-113zinc finger CCCH domain-containing protein 3
RefseqXP_015386408.11e-113zinc finger CCCH domain-containing protein 3
SwissprotQ0JP113e-43C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLV4SWC11e-112V4SWC1_9ROSI; Uncharacterized protein
STRINGXP_006480284.11e-113(Citrus sinensis)
STRINGXP_006428241.11e-113(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-49C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]