PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013209m
Common NameCICLE_v10013209mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 92aa    MW: 10344.9 Da    PI: 9.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013209mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-0722581854
                     HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     +  ++Lr+llP+ +   + +K+s + +L+++++YI+sL
  Ciclev10013209m 22 ELVAKLRQLLPEiR-DRRPQKVSASKVLQETCNYIRSL 58
                     56689*******76.788899***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.563458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-81974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-92077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-42258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQAA GVSRISDDQI IELVAKLRQL LPEIRDRRPQ KVSASKVLQE TCNYIRSLHR  60
EVDDLSERLS QLLSTIDADS PEAAIIRSLI M*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5673931e-51AJ567393.1 Citrus reticulata microsatellite DNA, clone CiO1CO6.
GenBankFR6923561e-51FR692356.1 Citrus reshni microsatellite DNA, locus mCrCIR01C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431132.14e-57transcription factor PRE5
SwissprotQ9LJX15e-43PRE5_ARATH; Transcription factor PRE5
TrEMBLV4SUE99e-56V4SUE9_9ROSI; Uncharacterized protein
STRINGXP_006431132.12e-56(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-45bHLH family protein