PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013334m
Common NameCICLE_v10013334mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 185aa    MW: 21236.6 Da    PI: 6.4134
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013334mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15e-1584131552
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                      +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l++ 
  Ciclev10013334m  84 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHV 131
                      689***************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.106.6E-64498IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003384.2E-1580144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2282132IPR004827Basic-leucine zipper domain
PfamPF001708.3E-1384130IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-1384132No hitNo description
CDDcd147028.90E-1985132No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-1399157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
EVSGLHYLLA PSLSQYSSHY ISSSDHNTST CQFDRFLNPI LNFHQIPPQV PEIINSQTSS  60
FSSNNSTSDE AEEQQQQSMI INERKQRRMI SNRESARRSR MRKQKHLDEL WSQVVWLRNE  120
NHQLVDKLNH VSGCHDKVMQ ENAQLKVEAT ELRQMLTDLQ LNSHYSSLKD LDDVPCCNAA  180
DLLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430890.21e-135basic leucine zipper 43
SwissprotQ9FMC24e-43BZP43_ARATH; Basic leucine zipper 43
TrEMBLV4SYL01e-133V4SYL0_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006430890.11e-134(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.16e-49basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]