PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10013435m

Common Name

CICLE_v10013435mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 186aa MW: 21519.8 Da PI: 6.6777

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10013435m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	130	8.1e-41	78	180	2	99
NF-YC 2 lksfwekq...iek..atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ++sfwe+q ie+ ++ ++nh lPlarikk++k+ e+vkm +a++P++++kace+fi+eltlr+wl++e+ krrtl+++dia a+ + fd Ciclev10013435m 78 VQSFWEQQksdIENatTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFD 171 689**98886651145789********************************************************************* PP NF-YC 91 flvdivprd 99 fl+d vp d Ciclev10013435m 172 FLIDFVPYD 180 ****987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	1.2E-17	58	167	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	1.37E-26	68	173	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.3E-30	102	178	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
TPSLTRKLHK RIIMRRPKVD LNVSEDDFTP SSTPSQDAAP VHNFMPMTPF MLPSHQPTEE 60 DEEEAHSLAL MMKQRQLVQS FWEQQKSDIE NATTESLRNH LLPLARIKKV MKSREEVKMT 120 TADSPAVFAK ACEMFIMELT LRAWLQTEDG KRRTLQRCDI ARALRLDELF DFLIDFVPYD 180 CRQVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	2e-33	69	178	10	118	HapE
4g92_C	2e-33	69	178	10	118	HapE
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430712.2	1e-123	nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	1e-37	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	V4ST92	1e-134	V4ST92_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006430712.1	1e-134	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18090	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	5e-40	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Ciclev10013435m
Entrez Gene	18038713

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]