PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10013453m

Common Name

CICLE_v10013453mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 254aa MW: 28464 Da PI: 8.6272

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10013453m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH rF eav+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYR+ Ciclev10013453m 15 KERLRWTQELHYRFEEAVNQLGGPDRATPKGILKAMGVPGLTIYHVKSHLQKYRI 69 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.497	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-30	13	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-18	14	69	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-15	100	144	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
PDSDMGSNRS DGSGKERLRW TQELHYRFEE AVNQLGGPDR ATPKGILKAM GVPGLTIYHV 60 KSHLQKYRIS KYIPEIGPSK FERRSISDML PNFGTTSAAQ LNEALQMQTD VYRRMSDHVE 120 VQRNLKLKIE AQGRFLDRIV KDHKNRATPN TKSGKPYSPV SLPALCEETE SNAKDFESDS 180 EADKNEIESG EGIRALKRLR VEDDTLPPMF RVSSLSPNSY NRDIQAKASY PAQDISFPWS 240 FAACSSPLVP SFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	14	72	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	14	72	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	14	72	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	14	72	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	14	72	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	14	72	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	14	72	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	14	72	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006429402.2	0.0	myb family transcription factor PHL7
Refseq	XP_006481047.1	0.0	myb family transcription factor PHL7-like
TrEMBL	V4SPR1	0.0	V4SPR1_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006429402.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16802	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-51	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10013453m
Entrez Gene	18039069