PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013455m
Common NameCICLE_v10013455mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 241aa    MW: 27686.2 Da    PI: 7.563
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013455mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll ++++++G   W+ ++ + g++R++k+c++rw++yl
  Ciclev10013455m  9 KGAWTEEEDDLLRKCIEKYGEAKWHQVPLRAGLHRCRKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding45.22.2e-1462107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Ciclev10013455m  62 RGEFAADEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNTHL 107
                      788999****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.477160IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-22558IPR009057Homeodomain-like
SuperFamilySSF466892.23E-277103IPR009057Homeodomain-like
SMARTSM007172.2E-14858IPR001005SANT/Myb domain
PfamPF002495.8E-15956IPR001005SANT/Myb domain
CDDcd001677.70E-101156No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2359111IPR009057Homeodomain-like
SMARTSM007172.5E-1461109IPR001005SANT/Myb domain
PROSITE profilePS5129419.46761111IPR017930Myb domain
PfamPF002495.2E-1362107IPR001005SANT/Myb domain
CDDcd001679.11E-964107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MADSLEVRKG AWTEEEDDLL RKCIEKYGEA KWHQVPLRAG LHRCRKSCRL RWLNYLNPNI  60
KRGEFAADEV DLILRLHKLL GNRWSLIAGR LPGRTANDVK NFWNTHLRKK VDKCCKNNKE  120
MKAKAEKGKG MTSNNLQLGD YNLGKQSTPS DHHHHHQQQQ ENETESVWWE SFLFGDELDQ  180
QGISSLLSRP EEESTTANIF AEKSPVVTKV KENRVIEAGQ SCTTDDFAFD AELWDLLNAK  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2461111105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4023340.0JN402334.1 Citrus sinensis cultivar Moro Myb transcription factor (Ruby) mRNA, complete cds.
GenBankJN4023350.0JN402335.1 Citrus sinensis cultivar Jingxian Myb transcription factor (Ruby) mRNA, complete cds.
GenBankKT7573480.0KT757348.1 Citrus sinensis R2R3 MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038103.11e-166LOW QUALITY PROTEIN: transcription factor MYB113
TrEMBLV4ST161e-178V4ST16_9ROSI; Uncharacterized protein
STRINGXP_006430622.11e-179(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-61myb domain protein 113