PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013466m
Common NameCICLE_v10013466mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 251aa    MW: 28797.3 Da    PI: 9.1445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013466mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.49e-201360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll + v+++G g+W+++ar  g++R++k+c++rw +yl
  Ciclev10013466m 13 KGPWTPEEDKLLTEHVNLHGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
                     79********************************************97 PP
2Myb_DNA-binding51.71.9e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Ciclev10013466m  66 RGQLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.696860IPR017930Myb domain
SuperFamilySSF466891.02E-3110107IPR009057Homeodomain-like
SMARTSM007172.9E-171262IPR001005SANT/Myb domain
PfamPF002491.6E-181360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231467IPR009057Homeodomain-like
CDDcd001672.49E-121560No hitNo description
PROSITE profilePS5129424.75461115IPR017930Myb domain
SMARTSM007171.8E-1365113IPR001005SANT/Myb domain
PfamPF002492.4E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2468114IPR009057Homeodomain-like
CDDcd001671.46E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGWGATTEQG WRKGPWTPEE DKLLTEHVNL HGEGRWSSVA RSAGLNRSGK SCRLRWVNYL  60
RPGLKRGQLT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKKEKSSQKQ  120
EKRKALLLKQ KQQQQKQQQQ HEDNMNRVSS NDEKMMSTAE HEKQMAFMQP PMAMENQSWP  180
TMYQDIASWP SDHHQPAVID ELGLWGGLWT FDDTNGRVDA STNCNKMAAA MQQNQAAPFA  240
LGGDSSNFCN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251311427127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5846881e-35JX584688.1 Gossypium hirsutum clone NBRI_GE18056 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430947.20.0transcription factor WER
TrEMBLV4STY90.0V4STY9_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006430947.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-68myb domain protein 121