PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013509m
Common NameCICLE_v10013509mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 223aa    MW: 24697.1 Da    PI: 9.6925
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013509mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.8e-10141187155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y GV++++++grW+++I+         +f  g f+ta +Aa+ ++ a+ +++g
  Ciclev10013509m 141 SHYLGVTFYRRTGRWESHIWL-------VNFA-GGFDTAPDAARVYDLAAIRFRG 187
                      7899*****************.......7888.66*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-14141194No hitNo description
SuperFamilySSF541711.7E-10141196IPR016177DNA-binding domain
PROSITE profilePS5103213.63142195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-10142195IPR001471AP2/ERF domain
SMARTSM003804.0E-17142201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MLDLNLSLRT SSSAGGGGGG GSCNNIVREK KVLELSNSNY NHTGTSRTFL LHPSSSVTTT  60
THSASSSSDV SFSAVGYSFS TLQSYNNNPN NNNNSNDSDD KTIQFFPANS EAEGVNNKQA  120
AMLQPRRQVK KLRRGPRSRS SHYLGVTFYR RTGRWESHIW LVNFAGGFDT APDAARVYDL  180
AAIRFRGLDA EINFSIDDYR EDLKYMNTYT KDEFVSALRL RH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038547.11e-113floral homeotic protein APETALA 2
SwissprotA0A0N7KMH02e-31AP24_ORYSJ; APETALA2-like protein 4
SwissprotB8B0I82e-31AP24_ORYSI; APETALA2-like protein 4
TrEMBLV4SY881e-162V4SY88_9ROSI; Uncharacterized protein
STRINGXP_006428896.11e-163(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3297022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.12e-31target of early activation tagged (EAT) 2
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]