PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013541m
Common NameCICLE_v10013541mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 512aa    MW: 55785.6 Da    PI: 7.5667
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013541mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.82.7e-09154216163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      eke +r rr   NRe+Ar   +R++a +eeL++k++ L++eN++Lk e e   ke+++l++ +
  Ciclev10013541m 154 EKEERRVRRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETIN 216
                      789999*****************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-7151216No hitNo description
SMARTSM003384.8E-13154218IPR004827Basic-leucine zipper domain
PfamPF001703.1E-8154216IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.277156219IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.86E-6158213No hitNo description
CDDcd147021.59E-14159210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
SCSVSSSSTA SLQSSPPESA EDRMVDMELE AAEALADLAH LAMIENGGGS GAAETATIWG  60
CKVKRVRKRV KTESPPGQAG SAMNPVDPEP PCSDPIDDQV ISDQQRDQTA CGNILIKPAK  120
ADQDAESLKR SSLCATRYIS MAGGRSRQNL TEAEKEERRV RRILANRESA RQTIRRRQAL  180
CEELTRKAAD LSQENESLKR EKELAVKEYQ SLETINKHLK AQVAKVMKSE VGETQGEVKL  240
AHAEMSSSPT NCPLLLYNHH ALTPLGWPSI IQSSQPVPSR HEMQNAVTFP SNISTSITGK  300
LASSQEQENP TDSNVARTPL YVVPCPWFFP LHDSGSGFHA PISNGLKVLQ DETSARNGYG  360
SGSSSKMTAD KENHHFLLPV KIKNEAYGLP EAQSYNDLND IPVTESPQDG GCQQIGHYTR  420
EATLTPPPLS SVGGSFIVKH DNVLQSDYTG HTKAVSKIAN HLVSHPEKKQ EPVNYPSRKL  480
VDAATAAEAR KRRKELTKLK NLHGRQCGMQ C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ESLKRS
2489494RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430258.20.0uncharacterized protein LOC18040087 isoform X2
TrEMBLV4S7N90.0V4S7N9_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006430258.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112112428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.16e-58bZIP family protein