PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10013546m

Common Name

CICLE_v10013546mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

BES1

Protein Properties

Length: 160aa MW: 18284.8 Da PI: 10.3097

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10013546m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	127.8	1.3e-39	35	108	3	76
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 + r p++kEr +nk RE rRRa+a i+aGLR++Gnyklpk+aDnn+ lkALc eAGw ve+DGtty+k++ Ciclev10013546m 35 KYRFPSEKERQRNKEREQRRRAVAKNIFAGLRKYGNYKLPKHADNNDLLKALCVEAGWHVEEDGTTYKKHFVTF 108 6799*****************************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.6E-36	36	109	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVDGKIKNAL SGCIKTTKGP WKVHKTTKDG AKVTKYRFPS EKERQRNKER EQRRRAVAKN 60 IFAGLRKYGN YKLPKHADNN DLLKALCVEA GWHVEEDGTT YKKHFVTFNS KGEASALERL 120 EMAFVPEEND PYSFSWFRPL AFSDSLWDGP SANQKSRMV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	6e-17	37	103	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	6e-17	37	103	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	6e-17	37	103	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	6e-17	37	103	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015386699.1	1e-73	protein BRASSINAZOLE-RESISTANT 1-like isoform X2
Refseq	XP_024038455.1	1e-73	protein BRASSINAZOLE-RESISTANT 1 isoform X2
TrEMBL	A0A2H5MXQ5	1e-116	A0A2H5MXQ5_CITUN; Uncharacterized protein
TrEMBL	V4SPX3	1e-116	V4SPX3_9ROSI; Uncharacterized protein
STRING	XP_006429487.1	1e-116	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19597	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50750.1	8e-21	BES1/BZR1 homolog 1

Link Out ? help Back to Top
Phytozome	Ciclev10013546m
Entrez Gene	18039674