PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10013589m

Common Name

CICLE_v10013589mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 106aa MW: 11819.8 Da PI: 8.1853

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10013589m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	25.7	2.6e-08	70	92	25	47
G2-like 25 ekAtPktilelmkvkgLtlehvk 47 e+AtPk+i ++m+v+gLt+++vk Ciclev10013589m 70 EVATPKQIGDVMQVEGLTIDQVK 92 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-5	69	92	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MSSRLSLNLS LKTSYDPKTI YNLVKDLSEM NSVSDKLSVL NDYLLKYEGE LARIAASKLE 60 LPQCKLLLIE VATPKQIGDV MQVEGLTIDQ VKRRVDLNSF RCIVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015386523.1	2e-33	uncharacterized protein LOC107177348 isoform X1
Refseq	XP_024038315.1	2e-33	uncharacterized protein LOC18038129
Refseq	XP_024955996.1	2e-33	uncharacterized protein LOC107177348 isoform X1
Refseq	XP_024955997.1	2e-33	uncharacterized protein LOC107177348 isoform X2
TrEMBL	V4SYB4	2e-68	V4SYB4_9ROSI; Uncharacterized protein
STRING	XP_006428931.1	3e-69	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15410	7	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	7e-06	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10013589m
Entrez Gene	18038129