PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013622m
Common NameCICLE_v10013622mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 185aa    MW: 21454.4 Da    PI: 10.3412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013622mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.71.5e-2551371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      lp G++F+P+d +lv +yL +k++g++ ++ +  +++ ++y   ePw++ +++ +    + +++yfF++ +kk+ +++r  r + +g+W+    
  Ciclev10013622m   5 LPLGCKFQPSDGQLVLFYLFNKISGTPAPFLDDfVRTENLYGNkEPWQIWRQFGGhdleDGEDLYFFTHLKKKSVNSSRIDRRVGTGTWQGEDV 98 
                      699************************888666488889996549****753333223255688**************************9999 PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+v+s+ +++++g kk + + k ++p+  +  W+mhey+l
  Ciclev10013622m  99 GKAVVSRnSRKKIGSKKRFRYEKDKSPH--NGCWIMHEYSL 137
                      999999867778*********9777766..99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-303158IPR003441NAC domain
PROSITE profilePS5100530.7775159IPR003441NAC domain
PfamPF023651.3E-166137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
TRPPLPLGCK FQPSDGQLVL FYLFNKISGT PAPFLDDFVR TENLYGNKEP WQIWRQFGGH  60
DLEDGEDLYF FTHLKKKSVN SSRIDRRVGT GTWQGEDVGK AVVSRNSRKK IGSKKRFRYE  120
KDKSPHNGCW IMHEYSLNPS LLPQNLQSSD LVLCRIRKNV GKENKRRMEN EESQSRSYKC  180
LKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-13515615165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038403.11e-111NAC transcription factor 29
TrEMBLV4S8B01e-134V4S8B0_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006430488.11e-135(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.29e-19NAC domain containing protein 47