PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013766m
Common NameCICLE_v10013766mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 184aa    MW: 20451 Da    PI: 8.4779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013766mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-182777156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     + ykGVr+  ++g+Wv+e+r+p   +k+ r++lg+f ++++Aa+a++aa+++l+g+
  Ciclev10013766m 27 PVYKGVRR--RNGKWVCELREP---NKKSRIWLGTFASPDKAARAYDAAALALRGN 77
                     68****85..47*********8...347*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-132776IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-192885IPR016177DNA-binding domain
SMARTSM003803.8E-282890IPR001471AP2/ERF domain
PROSITE profilePS5103219.9682884IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-282885IPR001471AP2/ERF domain
PRINTSPR003673.2E-72940IPR001471AP2/ERF domain
CDDcd000181.29E-132986No hitNo description
PRINTSPR003673.2E-76686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDNTAQKSST AQKRKAGRKK FQETRHPVYK GVRRRNGKWV CELREPNKKS RIWLGTFASP  60
DKAARAYDAA ALALRGNSAS LNFPEAAGAL RRAKSDDVRD IQCAAMEAAE KLSSPSSSKP  120
CMESNSENVQ DSRREFVDEE EMFNMPGIID GMAEALILTP PAMKSGFKWD DLDETVEFTL  180
WSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1426851273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430282.11e-134dehydration-responsive element-binding protein 1D
TrEMBLV4SS191e-132V4SS19_9ROSI; Uncharacterized protein
STRINGXP_006430282.11e-133(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.19e-36C-repeat/DRE binding factor 2