PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013796m
Common NameCICLE_v10013796mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 384aa    MW: 41669 Da    PI: 4.4227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013796mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-194594255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Ciclev10013796m 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94
                     789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.70E-3244101No hitNo description
SMARTSM003806.3E-3545108IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-1945102IPR016177DNA-binding domain
PROSITE profilePS5103219.55945102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2745101IPR001471AP2/ERF domain
PfamPF008479.2E-144594IPR001471AP2/ERF domain
PRINTSPR003675.4E-84657IPR001471AP2/ERF domain
PRINTSPR003675.4E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MARKRKACEG VEEKGADEGN MTWDEMVKEA AAAAALGGAR RARKRFVGVR QRPSGRWVAE  60
IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPCSPSTYS TPALPSKITN  120
LLLQRLKARN NSAFSPSSSF PANNQSERQP AEEYCEPEAT SADLSDTRLA DFLNDTEDYN  180
TIIGTNASTL DSMTTSLKSC LSDQKEEDSG SGSGLDYNLS DTGGQCSSGE EEAGSDIGSI  240
DFHFLDNVGS SSCFYSPFEI AAEIEDLVEA ETYADEPSML RAAMKRMKYE RKFSASLYAF  300
NGIPECLKLR LESGTKGCGK SELSKLQNAC SGKNIEEGKK IEEEGKQDEN SESSSAMGSN  360
SPTSDGELSI WSSLDLPPIC FVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13451011471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431219.10.0uncharacterized protein LOC18038124
TrEMBLV4UXE60.0V4UXE6_9ROSI; Uncharacterized protein
STRINGXP_006431219.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1827989
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-22related to AP2 11