PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013828m
Common NameCICLE_v10013828mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 217aa    MW: 24348.7 Da    PI: 8.2081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013828mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-082311948
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +G g W+ ++ + g++R++k+c++rw++yl
  Ciclev10013828m  2 YGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 31
                     89999***********************97 PP
2Myb_DNA-binding28.34.2e-093773139
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                     rg + ++E +l ++++k+lG++ W++Ia++++ gRt ++
  Ciclev10013828m 37 RGEFVADEIDLMIRLHKLLGNR-WSLIAARLP-GRTSND 73
                     788999****************.*********.***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.736135IPR017930Myb domain
SMARTSM0071741133IPR001005SANT/Myb domain
PfamPF002491.1E-6131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-12238IPR009057Homeodomain-like
CDDcd001670.00221231No hitNo description
SuperFamilySSF466893.77E-16273IPR009057Homeodomain-like
SMARTSM007170.00853678IPR001005SANT/Myb domain
PROSITE profilePS512947.1113679IPR017930Myb domain
PfamPF002491.5E-73773IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-143973IPR009057Homeodomain-like
CDDcd001672.53E-53973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYGEGKWHQV PLRAGLNRCR KSCRLRWLNY LKPNIKRGEF VADEIDLMIR LHKLLGNRWS  60
LIAARLPGRT SNDKLKPEAP KIAKHNVIKP RPRTFCKDLT WLRPKVTVLE NVQVQLKDNI  120
SNKLPSPITV DQAALENDDI KRWETLLEEK VDDGGSTYCS TSGEHNISLG DGGSAYCSEH  180
NTSLCAASEA GCYNAGEVGQ CQWSDISFDA DLWNIL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482384.11e-57LOW QUALITY PROTEIN: transcription factor MYB114-like
SwissprotQ9FNV92e-41MY113_ARATH; Transcription factor MYB113
TrEMBLV4T2W21e-159V4T2W2_9ROSI; Uncharacterized protein
STRINGXP_006430621.11e-160(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3298622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-44myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]