PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013879m
Common NameCICLE_v10013879mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 471aa    MW: 54708.4 Da    PI: 4.7765
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013879mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.43.9e-2581401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      lp G++F+P+de lv++yL +k++g++ ++ +  +++ ++y + ePw++ +++ +    + +++yfF++ +kk+ +g+r  r + +g+W+    
  Ciclev10013879m   8 LPLGCKFQPSDELLVQFYLFNKISGTPAPFVDDlVRTENLYGFkEPWQIWRQFGGpdleDGEDLYFFTPLKKKSVNGSRIDRRVGTGTWQGEDA 101
                      699************************88866648888***9879****754433334356789**************************9999 PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+v+s+ +++++g kk + + k ++p+  +  W+mhey+l
  Ciclev10013879m 102 GKAVVSRkSKKKIGSKKRFRYEKDKSPH--NGCWIMHEYSL 140
                      999999867788*********9777766..99*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-295161IPR003441NAC domain
PROSITE profilePS5100532.4888162IPR003441NAC domain
PfamPF023658.2E-179140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MERTRPPLPL GCKFQPSDEL LVQFYLFNKI SGTPAPFVDD LVRTENLYGF KEPWQIWRQF  60
GGPDLEDGED LYFFTPLKKK SVNGSRIDRR VGTGTWQGED AGKAVVSRKS KKKIGSKKRF  120
RYEKDKSPHN GCWIMHEYSL NPSLLPQNLR SSDLVLCRIR KNGEPAAGGQ KNSRKRRKLD  180
EPVVEEDIDQ PAEPVFVEEH QYHYLQEIQP QPSTELAPHN HLQSFQNHHL MQQSPACFFR  240
AQEENYQQSM TQEDPHELEL SDSHQNMQDT PVTEQNSHEQ LQLSAETHQH FTSSDLQEYQ  300
QMPVTDQIPH HQLQLSFEGY RSRVHTPYIL EENQDVVAST QQITYEQHEC TVENHQYMVH  360
QSSDIEENQQ LPASEQKLYE QLEQSVEKHR SMLPNPPNFQ DNQQLSTTEQ SLYDHLDKTI  420
ENHQQMLQTP SNIEGCQDLL AFDDTLLGLW LLDSSDENLS FDINDILNEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-17815915165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430448.10.0NAC transcription factor 47
TrEMBLV4S8820.0V4S882_9ROSI; Uncharacterized protein
STRINGXP_006430448.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2754123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-16NAC family protein